STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103465615Cell adhesion molecule L1-like b. (1208 aa)    
Predicted Functional Partners:
cntn2
Contactin 2.
   
 0.692
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.678
fam151b
Family with sequence similarity 151 member B.
   
 
 0.562
LOC103466916
Syndecan binding protein (syntenin) 2.
     
 0.557
CNTN1
Contactin 1.
   
 0.556
cntn1
Contactin 1b.
   
 0.556
cntn5
Contactin 5.
   
 0.556
LOC103467234
Contactin 3a, tandem duplicate 2.
   
 0.556
LOC103467239
Contactin 3a, tandem duplicate 1.
   
 0.556
LOC103465393
Uncharacterized protein.
   
 0.556
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.