STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103468022Uncharacterized protein. (916 aa)    
Predicted Functional Partners:
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.968
lin37
Lin-37 DREAM MuvB core complex component.
    
 0.967
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.951
foxm1
Forkhead box M1.
   
 0.932
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.903
rbbp4
Retinoblastoma binding protein 4.
   
 0.797
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
 0.797
e2f1
E2F transcription factor 1.
   
 0.751
ENSPREP00000023356
Retinoblastoma-like 1 (p107).
    
 0.694
LOC103466787
Retinoblastoma-like 2 (p130).
    
 0.694
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.