STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000001255Uncharacterized protein. (681 aa)    
Predicted Functional Partners:
sec62
SEC62 homolog, preprotein translocation factor.
   
 
 0.927
rb1cc1
RB1-inducible coiled-coil 1.
   
 0.904
retreg1
Reticulophagy regulator 1.
    
 
 0.726
ENSPREP00000005380
Uncharacterized protein.
     
 0.677
tex264
Testis expressed 264, ER-phagy receptor a.
     
 0.677
Unc79
Uncharacterized protein.
    
 0.654
psmc3ip
Reticulophagy regulator family member 3.
    
 
 0.600
retreg2
Reticulophagy regulator family member 2.
    
 
 0.599
LOC103467797
Rap guanine nucleotide exchange factor (GEF) 3.
      
 0.598
ENSPREP00000022134
SKICH domain-containing protein.
   
 0.547
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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