STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103472852Calcium channel, voltage-dependent, gamma subunit 8a. (452 aa)    
Predicted Functional Partners:
ppp1cb
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.758
LOC103468963
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.758
ppp1cc
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.758
PPP1CB
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.758
LOC103481373
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.758
LOC103459892
Calcium/calmodulin-dependent protein kinase II alpha.
   
 0.743
LOC103469495
Calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 2.
   
 0.743
camk2b
Calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2.
   
 0.743
LOC103480087
Calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 1; Belongs to the protein kinase superfamily.
   
 0.743
LOC103476425
Calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 2.
    
 0.722
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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