STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103477692Transmembrane protein 106Ba. (258 aa)    
Predicted Functional Partners:
epdr1
Ependymin related 1.
      
 0.597
c9orf72
Zgc:100846.
      
 0.577
chmp2b
Charged multivesicular body protein 2Bb.
    
 
 0.544
tmem41b
Transmembrane protein 41B.
      
 0.503
tpcn2
Uncharacterized protein.
   
  
 0.500
ablim1
Actin binding LIM protein 1a.
      
 0.495
LOC103477201
Prosaposin; Prosaposin: Behaves as a myelinotrophic and neurotrophic factor, these effects are mediated by its G-protein-coupled receptors, GPR37 and GPR37L1, undergoing ligand-mediated internalization followed by ERK phosphorylation signaling.
      
 0.484
LOC103470281
Surfactant protein Bb.
      
 0.484
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.472
mcrs1
Microspherule protein 1.
    
 0.467
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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