ENSPREP00000001288 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000001288

Uncharacterized protein. (203 aa)

Predicted Functional Partners:

Morc3

0.739

ENSPREP00000019354

0.472

abca12

0.468

mbd1

0.468

ifih1

0.449

nat10

0.448

ENSPREP00000024075

0.423

setdb1

0.409

LOC103457816

0.409

bend3

0.405

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000001288	ENSPREP00000019354	ENSPREP00000001288	ENSPREP00000019354	Uncharacterized protein.	Zinc finger and BTB domain containing 4.	0.472
ENSPREP00000001288	ENSPREP00000024075	ENSPREP00000001288	ENSPREP00000024075	Uncharacterized protein.	Morc6_S5 domain-containing protein.	0.423
ENSPREP00000001288	LOC103457816	ENSPREP00000001288	ENSPREP00000033253	Uncharacterized protein.	Uncharacterized protein.	0.409
ENSPREP00000001288	Morc3	ENSPREP00000001288	ENSPREP00000001317	Uncharacterized protein.	Uncharacterized protein.	0.739
ENSPREP00000001288	abca12	ENSPREP00000001288	ENSPREP00000017654	Uncharacterized protein.	ATP-binding cassette, sub-family A (ABC1), member 12.	0.468
ENSPREP00000001288	bend3	ENSPREP00000001288	ENSPREP00000007708	Uncharacterized protein.	BEN domain containing 3.	0.405
ENSPREP00000001288	ifih1	ENSPREP00000001288	ENSPREP00000011433	Uncharacterized protein.	Interferon induced with helicase C domain 1.	0.449
ENSPREP00000001288	mbd1	ENSPREP00000001288	ENSPREP00000032183	Uncharacterized protein.	Methyl-CpG binding domain protein 1b.	0.468
ENSPREP00000001288	nat10	ENSPREP00000001288	ENSPREP00000023915	Uncharacterized protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.448
ENSPREP00000001288	setdb1	ENSPREP00000001288	ENSPREP00000025862	Uncharacterized protein.	SET domain bifurcated histone lysine methyltransferase 1b.	0.409
ENSPREP00000019354	ENSPREP00000001288	ENSPREP00000019354	ENSPREP00000001288	Zinc finger and BTB domain containing 4.	Uncharacterized protein.	0.472
ENSPREP00000019354	ENSPREP00000024075	ENSPREP00000019354	ENSPREP00000024075	Zinc finger and BTB domain containing 4.	Morc6_S5 domain-containing protein.	0.472
ENSPREP00000019354	Morc3	ENSPREP00000019354	ENSPREP00000001317	Zinc finger and BTB domain containing 4.	Uncharacterized protein.	0.472
ENSPREP00000019354	bend3	ENSPREP00000019354	ENSPREP00000007708	Zinc finger and BTB domain containing 4.	BEN domain containing 3.	0.593
ENSPREP00000024075	ENSPREP00000001288	ENSPREP00000024075	ENSPREP00000001288	Morc6_S5 domain-containing protein.	Uncharacterized protein.	0.423
ENSPREP00000024075	ENSPREP00000019354	ENSPREP00000024075	ENSPREP00000019354	Morc6_S5 domain-containing protein.	Zinc finger and BTB domain containing 4.	0.472
ENSPREP00000024075	LOC103457816	ENSPREP00000024075	ENSPREP00000033253	Morc6_S5 domain-containing protein.	Uncharacterized protein.	0.409
ENSPREP00000024075	bend3	ENSPREP00000024075	ENSPREP00000007708	Morc6_S5 domain-containing protein.	BEN domain containing 3.	0.405
ENSPREP00000024075	ifih1	ENSPREP00000024075	ENSPREP00000011433	Morc6_S5 domain-containing protein.	Interferon induced with helicase C domain 1.	0.449
ENSPREP00000024075	nat10	ENSPREP00000024075	ENSPREP00000023915	Morc6_S5 domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.448