STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rspry1Ring finger and SPRY domain containing 1. (588 aa)    
Predicted Functional Partners:
rtcb
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
 
  
 
 0.646
LOC103473466
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.600
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.600
arl2bp
ADP-ribosylation factor-like 2 binding protein.
 
    
 0.598
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.573
LOC103472857
Coiled-coil domain containing 106b.
      
 0.571
nelfb
Negative elongation factor complex member B.
    
 
 0.556
zc3h15
Zinc finger CCCH-type containing 15.
   
  
 0.552
mettl6
Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.
   
  
 0.552
tpra1
Transmembrane protein, adipocyte asscociated 1.
      
 0.549
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.