ddx43 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ddx43

DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family. (652 aa)

Predicted Functional Partners:

srgap2

0.804

rps11

0.769

rxylt1

0.730

LOC103467010

0.676

LOC103476466

0.666

LOC103463080

0.666

pus7l

0.664

LOC103467777

0.649

srp72

0.636

LOC103481653

0.610

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103463080	ddx43	ENSPREP00000005917	ENSPREP00000001303	Potassium voltage-gated channel, KQT-like subfamily, member 5b; Belongs to the potassium channel family.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.	0.666
LOC103463080	rps11	ENSPREP00000005917	ENSPREP00000021648	Potassium voltage-gated channel, KQT-like subfamily, member 5b; Belongs to the potassium channel family.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.501
LOC103467010	LOC103481653	ENSPREP00000014844	ENSPREP00000014596	Cyclin-dependent kinase 11B.	Uncharacterized protein.	0.671
LOC103467010	ddx43	ENSPREP00000014844	ENSPREP00000001303	Cyclin-dependent kinase 11B.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.	0.676
LOC103467010	rxylt1	ENSPREP00000014844	ENSPREP00000000734	Cyclin-dependent kinase 11B.	Ribitol xylosyltransferase 1.	0.572
LOC103467010	srgap2	ENSPREP00000014844	ENSPREP00000005273	Cyclin-dependent kinase 11B.	SLIT-ROBO Rho GTPase activating protein 2.	0.922
LOC103467777	ddx43	ENSPREP00000000986	ENSPREP00000001303	Zgc:56699.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.	0.649
LOC103476466	ddx43	ENSPREP00000001191	ENSPREP00000001303	Potassium voltage-gated channel, KQT-like subfamily, member 5a; Belongs to the potassium channel family.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.	0.666
LOC103476466	rps11	ENSPREP00000001191	ENSPREP00000021648	Potassium voltage-gated channel, KQT-like subfamily, member 5a; Belongs to the potassium channel family.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.501
LOC103481653	LOC103467010	ENSPREP00000014596	ENSPREP00000014844	Uncharacterized protein.	Cyclin-dependent kinase 11B.	0.671
LOC103481653	ddx43	ENSPREP00000014596	ENSPREP00000001303	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.	0.610
LOC103481653	rxylt1	ENSPREP00000014596	ENSPREP00000000734	Uncharacterized protein.	Ribitol xylosyltransferase 1.	0.532
LOC103481653	srgap2	ENSPREP00000014596	ENSPREP00000005273	Uncharacterized protein.	SLIT-ROBO Rho GTPase activating protein 2.	0.727
ddx43	LOC103463080	ENSPREP00000001303	ENSPREP00000005917	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.	Potassium voltage-gated channel, KQT-like subfamily, member 5b; Belongs to the potassium channel family.	0.666
ddx43	LOC103467010	ENSPREP00000001303	ENSPREP00000014844	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.	Cyclin-dependent kinase 11B.	0.676
ddx43	LOC103467777	ENSPREP00000001303	ENSPREP00000000986	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.	Zgc:56699.	0.649
ddx43	LOC103476466	ENSPREP00000001303	ENSPREP00000001191	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.	Potassium voltage-gated channel, KQT-like subfamily, member 5a; Belongs to the potassium channel family.	0.666
ddx43	LOC103481653	ENSPREP00000001303	ENSPREP00000014596	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.610
ddx43	pus7l	ENSPREP00000001303	ENSPREP00000016986	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.	Pseudouridine synthase 7 like.	0.664
ddx43	rps11	ENSPREP00000001303	ENSPREP00000021648	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.769