STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103464161Protocadherin 10a. (997 aa)    
Predicted Functional Partners:
LOC103463851
E74-like factor 2b (ets domain transcription factor).
      
 0.668
GPR139
G protein-coupled receptor 139.
      
 0.573
LOC103464091
CREB binding protein a.
    
 
 0.530
LOC103469345
STRA6-like.
    
 0.522
pnpla6
Patatin-like phospholipase domain containing 6.
    
 
 0.521
tll1
Metalloendopeptidase.
      
 0.515
nxnl1
Nucleoredoxin like 1.
      
 0.515
cabp2
Calcium binding protein 2a.
      
 0.515
xpa
Xeroderma pigmentosum, complementation group A.
      
 0.513
nanos3
Nanos homolog 3; Belongs to the nanos family.
      
 0.454
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.