STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pigbMannosyltransferase. (475 aa)    
Predicted Functional Partners:
pigv
GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis.
    
 0.712
chst11
Carbohydrate sulfotransferase.
   
  
 0.684
xrcc3
DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily.
   
  
 0.683
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
      
 0.681
pigl
Phosphatidylinositol glycan anchor biosynthesis, class L.
   
  
 0.661
gpaa1
Glycosylphosphatidylinositol anchor attachment 1.
    
 
 0.656
pigt
Phosphatidylinositol glycan anchor biosynthesis, class T.
    
 
 0.656
pigh
Phosphatidylinositol glycan anchor biosynthesis, class H.
    
 
 0.654
pigp
Phosphatidylinositol glycan anchor biosynthesis, class P.
    
 
 0.654
pigg
Phosphatidylinositol glycan anchor biosynthesis class G.
    
 
 0.652
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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