STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stx18Syntaxin 18. (338 aa)    
Predicted Functional Partners:
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
   
 0.999
rint1
RAD50 interactor 1.
    
 0.998
LOC103479084
SEC22 homolog B, vesicle trafficking protein a; Belongs to the synaptobrevin family.
   
 0.996
LOC103475664
BCL2 interacting protein 1b.
   
 0.996
LOC103463624
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
   
 0.996
zw10
Zw10 kinetochore protein.
    
 0.996
LOC103470871
BCL2 interacting protein 1a.
   
 0.996
nbas
Neuroblastoma amplified sequence.
    
 0.995
napg
N-ethylmaleimide-sensitive factor attachment protein, gamma b.
    
 0.989
stx5
Syntaxin 5A; Belongs to the syntaxin family.
   
 0.988
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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