STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103464137Protocadherin 18a. (1188 aa)    
Predicted Functional Partners:
LOC103479596
Zona pellucida glycoprotein 2, like 2.
    
 0.561
LOC103470385
Cilia and flagella associated protein 52.
     
 0.559
LOC103478887
Zona pellucida glycoprotein 3f, tandem duplicate 1.
      
 0.556
efcab2
EF-hand calcium binding domain 2.
      
 0.551
LOC103477735
Zona pellucida glycoprotein 3d tandem duplicate 2.
      
 0.548
morn3
MORN repeat containing 3.
      
 0.548
LOC103461813
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.548
spata18
Spermatogenesis associated 18.
      
 0.548
marchf11
Membrane-associated ring finger (C3HC4) 11.
      
 0.548
LOC103478590
Speriolin_C domain-containing protein.
      
 0.514
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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