STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000001398Uncharacterized protein. (404 aa)    
Predicted Functional Partners:
mad2l1bp
MAD2L1 binding protein.
    
   0.577
Naa38
N(alpha)-acetyltransferase 38, NatC auxiliary subunit.
    
 0.524
epm2a
EPM2A glucan phosphatase, laforin.
    
 
 0.512
brca1
Uncharacterized protein.
    
  0.460
clg5h1orf50
Zgc:112255.
    
   0.456
mysm1
Myb-like, SWIRM and MPN domains 1.
   
  0.452
LOC103461057
SET domain and mariner transposase fusion gene.
   
 0.444
tbl2
Transducin (beta)-like 2.
    
 0.420
LOC103466638
Family with sequence similarity 174 member B.
      
 0.408
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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