STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc8aLeucine rich repeat containing 8 VRAC subunit Aa. (794 aa)    
Predicted Functional Partners:
LOC103463972
Leucine rich repeat containing 8 VRAC subunit C.
     
  0.532
LOC103459210
Decorin; May affect the rate of fibrils formation.
  
     0.522
lrtm2
Leucine-rich repeats and transmembrane domains 2a.
  
 
  0.497
LOC103478198
Uncharacterized protein.
    
 0.496
lrrc8d
Leucine rich repeat containing 8 VRAC subunit Da.
   
  0.490
Lrrc8e
Pannexin_like domain-containing protein.
   
  0.490
ENSPREP00000020663
Uncharacterized protein.
   
  0.490
LOC103463973
Leucine rich repeat containing 8 VRAC subunit Db.
   
  0.490
LOC103473983
Si:dkey-28o19.1.
  
     0.475
Chadl
Chondroadherin-like b.
  
     0.471
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.