STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466820Matrix metallopeptidase 15a. (660 aa)    
Predicted Functional Partners:
ENSPREP00000016504
BZIP domain-containing protein.
      
 0.681
ccni
Cyclin I; Belongs to the cyclin family.
      
 0.550
LOC103468846
TIMP metallopeptidase inhibitor 2b.
   
 0.547
LOC103481516
TIMP metallopeptidase inhibitor 2a.
   
 0.547
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.547
LOC103467753
CCAAT enhancer binding protein beta.
   
  
 0.538
LOC103481601
Uncharacterized protein.
   
 0.516
pgr
Progesterone receptor.
    
 
 0.487
Cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase).
      
 0.477
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 1.
    
 0.440
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.