STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phyhd1Phytanoyl-CoA dioxygenase domain containing 1. (264 aa)    
Predicted Functional Partners:
nup188
Nucleoporin 188.
 
      0.767
pex7
Peroxisomal biogenesis factor 7.
    
 0.748
gale
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
    
 0.620
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
  
 0.615
plpp2
Phospholipid phosphatase 2a.
      
 0.581
LOC103463553
Phospholipid phosphatase 2b.
      
 0.581
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
     
 0.567
yrdc
YrdC N(6)-threonylcarbamoyltransferase domain containing.
     
 0.528
Clg7h6orf226
Uncharacterized protein.
    
   0.518
pex10
Peroxisomal biogenesis factor 10.
   
 
 0.510
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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