ENSPREP00000001490 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000001490

Si:dkey-44k1.5. (683 aa)

Predicted Functional Partners:

calm2

0.957

cnga3

0.844

cnga4

0.842

LOC103467465

0.842

ENSPREP00000031276

0.842

LOC103471015

0.841

LOC103460308

0.841

ENSPREP00000026286

0.827

LOC103459922

0.598

calm1

0.591

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000001490	ENSPREP00000026286	ENSPREP00000001490	ENSPREP00000026286	Si:dkey-44k1.5.	Cyclic nucleotide-binding domain-containing protein.	0.827
ENSPREP00000001490	ENSPREP00000031276	ENSPREP00000001490	ENSPREP00000031276	Si:dkey-44k1.5.	Cyclic nucleotide gated channel alpha 2b.	0.842
ENSPREP00000001490	LOC103459922	ENSPREP00000001490	ENSPREP00000002113	Si:dkey-44k1.5.	Guanylate cyclase activator 1d.	0.598
ENSPREP00000001490	LOC103460308	ENSPREP00000001490	ENSPREP00000020718	Si:dkey-44k1.5.	Cyclic nucleotide gated channel subunit alpha 1b.	0.841
ENSPREP00000001490	LOC103467465	ENSPREP00000001490	ENSPREP00000013890	Si:dkey-44k1.5.	Cyclic nucleotide gated channel subunit alpha 1a.	0.842
ENSPREP00000001490	LOC103471015	ENSPREP00000001490	ENSPREP00000004024	Si:dkey-44k1.5.	Cyclic nucleotide-binding domain-containing protein.	0.841
ENSPREP00000001490	calm1	ENSPREP00000001490	ENSPREP00000027421	Si:dkey-44k1.5.	Calmodulin 3a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.591
ENSPREP00000001490	calm2	ENSPREP00000001490	ENSPREP00000015904	Si:dkey-44k1.5.	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.957
ENSPREP00000001490	cnga3	ENSPREP00000001490	ENSPREP00000025240	Si:dkey-44k1.5.	Cyclic nucleotide gated channel subunit alpha 3a.	0.844
ENSPREP00000001490	cnga4	ENSPREP00000001490	ENSPREP00000005649	Si:dkey-44k1.5.	Cyclic nucleotide gated channel subunit alpha 4.	0.842
ENSPREP00000026286	ENSPREP00000001490	ENSPREP00000026286	ENSPREP00000001490	Cyclic nucleotide-binding domain-containing protein.	Si:dkey-44k1.5.	0.827
ENSPREP00000026286	ENSPREP00000031276	ENSPREP00000026286	ENSPREP00000031276	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide gated channel alpha 2b.	0.551
ENSPREP00000026286	LOC103460308	ENSPREP00000026286	ENSPREP00000020718	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide gated channel subunit alpha 1b.	0.549
ENSPREP00000026286	LOC103467465	ENSPREP00000026286	ENSPREP00000013890	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide gated channel subunit alpha 1a.	0.551
ENSPREP00000026286	LOC103471015	ENSPREP00000026286	ENSPREP00000004024	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.551
ENSPREP00000026286	calm1	ENSPREP00000026286	ENSPREP00000027421	Cyclic nucleotide-binding domain-containing protein.	Calmodulin 3a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.454
ENSPREP00000026286	calm2	ENSPREP00000026286	ENSPREP00000015904	Cyclic nucleotide-binding domain-containing protein.	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.454
ENSPREP00000026286	cnga3	ENSPREP00000026286	ENSPREP00000025240	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide gated channel subunit alpha 3a.	0.549
ENSPREP00000026286	cnga4	ENSPREP00000026286	ENSPREP00000005649	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide gated channel subunit alpha 4.	0.558
ENSPREP00000031276	ENSPREP00000001490	ENSPREP00000031276	ENSPREP00000001490	Cyclic nucleotide gated channel alpha 2b.	Si:dkey-44k1.5.	0.842