STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103468028Charged multivesicular body protein 4Bb. (221 aa)    
Predicted Functional Partners:
chmp7
Charged multivesicular body protein 7.
    
 0.987
pdcd6ip
Programmed cell death 6 interacting protein.
   
 0.986
chmp1a
Charged multivesicular body protein 1A.
   
 0.968
chmp1b
Chromatin modifying protein 1B.
   
 0.968
LOC103470937
Uncharacterized protein.
   
 0.968
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.960
chmp2a
Charged multivesicular body protein 2A.
   
 0.959
vps25
Vacuolar protein sorting 25 homolog.
    
 0.958
chmp3
Charged multivesicular body protein 3.
   
 0.953
vps36
Vacuolar protein sorting 36 homolog.
    
 0.950
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.