STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103468028Charged multivesicular body protein 4Bb. (221 aa)    
Predicted Functional Partners:
pdcd6ip
Programmed cell death 6 interacting protein.
   
 0.988
chmp7
Charged multivesicular body protein 7.
    
 0.982
chmp3
Charged multivesicular body protein 3.
   
 0.958
chmp2a
Charged multivesicular body protein 2A.
   
 0.949
chmp4c
Charged multivesicular body protein 4C.
  
  
 
0.910
ptpn23
Protein tyrosine phosphatase, non-receptor type 23, a.
   
 0.906
LOC103464227
Uncharacterized protein.
  
  
 
0.901
ist1
IST1 factor associated with ESCRT-III.
    
 0.888
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.880
LOC103468818
Charged multivesicular body protein 6a.
    
0.861
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.