STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRC29Leucine rich repeat containing 29. (195 aa)    
Predicted Functional Partners:
fbxo33
F-box protein 33.
      
 0.730
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.654
fbxo25
F-box protein 25.
     
 0.645
LOC103465417
Zgc:175088.
     
 0.600
fbxo32
F-box protein 32.
     
 0.537
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.530
rnf7
Ring finger protein 7.
    
 0.530
fbxo48
F-box protein 48.
      
 0.503
fbxl22
F-box and leucine-rich repeat protein 22.
      
 0.484
cacul1
CDK2 associated cullin domain 1; Belongs to the cullin family.
    
 0.470
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.