STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Alkbh6AlkB homolog 6. (231 aa)    
Predicted Functional Partners:
med29
Mediator complex subunit 29.
    
 
 0.930
alkbh1
AlkB homolog 1, histone H2A dioxygenase.
   
  
 0.865
Alkbh7
AlkB homolog 7.
   
  
 0.796
alkbh4
AlkB homolog 4, lysine demthylase.
      
 0.783
rsu1
Ras suppressor protein 1.
      
 0.779
alkbh2
AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
      
 0.728
vps51
VPS51 subunit of GARP complex.
      
 0.707
dhx30
DEAH (Asp-Glu-Ala-His) box helicase 30.
      
 0.611
adi1
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). Also down-regulates cell migration mediated by MMP14. Belongs to the acireductone dioxygenase (ARD) family.
      
 0.603
brd7
Bromodomain containing 7.
      
 0.596
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.