STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103472840Intermediate filament family orphan 1a; Belongs to the intermediate filament family. (628 aa)    
Predicted Functional Partners:
aldh4a1
Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
      0.611
Xrcc4
Uncharacterized protein.
    
 
 0.569
ENSPREP00000004746
V-SNARE coiled-coil homology domain-containing protein.
    
   0.564
tcf19
Transcription factor 19 (SC1), like.
      
 0.561
LOC103464449
Aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase).
      
 0.492
LOC103478011
Wu:fj39g12.
      
 0.423
TANC2
Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2.
      
 0.409
NEK9
NIMA related kinase 9.
    
 
 0.405
rev3l
REV3 like, DNA directed polymerase zeta catalytic subunit.
      
 0.403
LOC103472839
Vesicle-associated membrane protein 1.
    
   0.400
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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