STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sft2d3Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. Belongs to the SFT2 family. (214 aa)    
Predicted Functional Partners:
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 
 0.916
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 
 0.856
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 
 0.826
LOC103465806
Golgi transport 1Bb.
   
 
 0.817
GOLT1B
Golgi transport 1B.
   
 
 0.817
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
   0.796
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
    
 
 0.765
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
   0.728
bet1
Bet1 golgi vesicular membrane trafficking protein.
    
 
 0.640
LOC103471779
Nipsnap homolog 3A (C. elegans).
      
 0.598
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.