Acbd5 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Acbd5

ACB domain-containing protein. (81 aa)

Predicted Functional Partners:

zfpl1

0.728

gdap1

0.691

agps

0.690

pex19

0.668

pex14

0.660

abcd3

0.638

pex16

0.622

pxmp2

0.621

LOC103464667

0.609

atad1

0.606

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Acbd5	LOC103464667	ENSPREP00000001554	ENSPREP00000016218	ACB domain-containing protein.	VAMP (vesicle-associated membrane protein)-associated protein B and C.	0.609
Acbd5	abcd3	ENSPREP00000001554	ENSPREP00000008027	ACB domain-containing protein.	ATP-binding cassette, sub-family D (ALD), member 3a.	0.638
Acbd5	agps	ENSPREP00000001554	ENSPREP00000007958	ACB domain-containing protein.	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	0.690
Acbd5	atad1	ENSPREP00000001554	ENSPREP00000002374	ACB domain-containing protein.	ATPase family AAA domain containing 1b; Belongs to the AAA ATPase family.	0.606
Acbd5	gdap1	ENSPREP00000001554	ENSPREP00000020068	ACB domain-containing protein.	Ganglioside induced differentiation associated protein 1; Belongs to the GST superfamily.	0.691
Acbd5	pex14	ENSPREP00000001554	ENSPREP00000023963	ACB domain-containing protein.	Peroxisomal biogenesis factor 14.	0.660
Acbd5	pex16	ENSPREP00000001554	ENSPREP00000012233	ACB domain-containing protein.	Peroxisomal membrane protein PEX16.	0.622
Acbd5	pex19	ENSPREP00000001554	ENSPREP00000001567	ACB domain-containing protein.	Peroxisomal biogenesis factor 19.	0.668
Acbd5	pxmp2	ENSPREP00000001554	ENSPREP00000032787	ACB domain-containing protein.	Peroxisomal membrane protein 2; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.621
Acbd5	zfpl1	ENSPREP00000001554	ENSPREP00000008168	ACB domain-containing protein.	Zinc finger protein-like 1.	0.728
LOC103464667	Acbd5	ENSPREP00000016218	ENSPREP00000001554	VAMP (vesicle-associated membrane protein)-associated protein B and C.	ACB domain-containing protein.	0.609
LOC103464667	zfpl1	ENSPREP00000016218	ENSPREP00000008168	VAMP (vesicle-associated membrane protein)-associated protein B and C.	Zinc finger protein-like 1.	0.686
abcd3	Acbd5	ENSPREP00000008027	ENSPREP00000001554	ATP-binding cassette, sub-family D (ALD), member 3a.	ACB domain-containing protein.	0.638
abcd3	agps	ENSPREP00000008027	ENSPREP00000007958	ATP-binding cassette, sub-family D (ALD), member 3a.	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	0.488
abcd3	atad1	ENSPREP00000008027	ENSPREP00000002374	ATP-binding cassette, sub-family D (ALD), member 3a.	ATPase family AAA domain containing 1b; Belongs to the AAA ATPase family.	0.707
abcd3	gdap1	ENSPREP00000008027	ENSPREP00000020068	ATP-binding cassette, sub-family D (ALD), member 3a.	Ganglioside induced differentiation associated protein 1; Belongs to the GST superfamily.	0.690
abcd3	pex14	ENSPREP00000008027	ENSPREP00000023963	ATP-binding cassette, sub-family D (ALD), member 3a.	Peroxisomal biogenesis factor 14.	0.832
abcd3	pex16	ENSPREP00000008027	ENSPREP00000012233	ATP-binding cassette, sub-family D (ALD), member 3a.	Peroxisomal membrane protein PEX16.	0.879
abcd3	pex19	ENSPREP00000008027	ENSPREP00000001567	ATP-binding cassette, sub-family D (ALD), member 3a.	Peroxisomal biogenesis factor 19.	0.997
abcd3	pxmp2	ENSPREP00000008027	ENSPREP00000032787	ATP-binding cassette, sub-family D (ALD), member 3a.	Peroxisomal membrane protein 2; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.688