STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478581Chromobox homolog 3b. (187 aa)    
Predicted Functional Partners:
rnf2
Ring finger protein 2.
    
 0.529
RING1
Ring finger protein 1.
    
 0.529
chaf1a
Chromatin assembly factor 1, subunit A (p150).
   
 
 0.513
emsy
EMSY transcriptional repressor, BRCA2 interacting.
    
 
 0.502
ENSPREP00000002301
Histone H3; Belongs to the histone H3 family.
   
 0.494
LOC103461301
Histone H3; Belongs to the histone H3 family.
   
 0.494
HIST2H3PS2
Histone H3; Belongs to the histone H3 family.
   
 0.494
LOC103474859
Histone domain-containing protein.
   
 0.494
LOC103474858
Histone H3; Belongs to the histone H3 family.
   
 0.494
ENSPREP00000012913
Histone domain-containing protein.
   
 0.494
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.