STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sez6Seizure related 6 homolog a. (1010 aa)    
Predicted Functional Partners:
srrd
SRR1 domain containing.
      
 0.503
mvd
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
    
 0.486
LOC103471818
Leucine rich repeat and Ig domain containing 2a.
   
 0.457
negr1
Neuronal growth regulator 1.
   
 0.453
ppp4c
Serine/threonine-protein phosphatase.
    
 0.447
ENSPREP00000014094
NDK domain-containing protein.
   
 0.422
ENSPREP00000034105
Proline-rich transmembrane protein 2.
   
 0.420
phf12
PHD finger protein 12b.
 
  
 
 0.418
asphd1
Asp_Arg_Hydrox domain-containing protein.
   
  
 0.418
asphd2
Aspartate beta-hydroxylase domain containing 2.
   
  
 0.418
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.