STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vldlrVery low density lipoprotein receptor. (830 aa)    
Predicted Functional Partners:
RELN
Reelin.
    
 0.943
pcsk9
Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family.
    
 0.883
mylip
Myosin regulatory light chain interacting protein a.
    
 0.839
ENSPREP00000030577
Uncharacterized protein.
 
  
 
0.830
dab1
DAB adaptor protein 1a.
    
 0.827
LOC103478981
DAB adaptor protein 1b.
    
 0.821
ldlrap1
Low density lipoprotein receptor adaptor protein 1b.
    
 0.793
ENSPREP00000030224
PID domain-containing protein.
    
 0.760
LOC103477848
Apolipoprotein Eb.
    
 0.755
cdc7
Cell division cycle 7 homolog (S. cerevisiae).
   
  
 0.706
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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