STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103481435Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family. (633 aa)    
Predicted Functional Partners:
LOC103466273
Choline kinase alpha.
 
 
 
  0.902
Phospho1
Phosphatase, orphan 1.
     
 0.902
chkb
Choline kinase beta.
 
 
 
  0.901
chat
Choline O-acetyltransferase a; Belongs to the carnitine/choline acetyltransferase family.
  
  
 
0.901
ENSPREP00000033037
Uncharacterized protein.
     
  0.900
LOC103481437
Solute carrier family 18 member A3.
 
 
  
 0.755
ENSPREP00000026258
Solute carrier family 18 member 3a.
 
 
  
 0.754
rpp14
Ribonuclease P/MRP 14 subunit.
   
 0.739
scp2
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.729
LOC103464006
Sterol carrier protein 2b.
   
 0.729
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.