STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
depdc4Si:ch211-265o23.1. (542 aa)    
Predicted Functional Partners:
CHST8
Carbohydrate sulfotransferase.
      
 0.767
Chst2
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.766
tcp11
Uncharacterized protein.
      
 0.753
pald1
Phosphatase domain containing paladin 1a.
      
 0.745
LOC103482125
Acyl-CoA binding domain containing 4.
      
 0.725
ttc5
Tetratricopeptide repeat domain 5.
    
   0.464
usp37
Ubiquitin carboxyl-terminal hydrolase.
      
 0.438
flrt3
Fibronectin leucine rich transmembrane 3.
      
 0.403
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.