STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103474035Secreted phosphoprotein 1. (356 aa)    
Predicted Functional Partners:
ENSPREP00000013903
Uncharacterized protein.
    
 0.641
LOC103465962
SPARC-like 1.
      
 0.627
LOC103466132
CD44 molecule (Indian blood group) b.
   
 
  0.605
fancm
Uncharacterized protein.
   
 0.597
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.555
LOC103465941
Uncharacterized protein.
      
 0.549
LOC103465969
Uncharacterized protein.
      
 0.549
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.546
LOC103470482
Survival of motor neuron 1, telomeric.
    
 0.543
pold1
DNA polymerase.
   
 0.541
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.