rad51 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

rad51

RAD51 recombinase. (219 aa)

Predicted Functional Partners:

brca2

0.999

brca1

0.999

rad52

0.998

xrcc3

0.997

rad50

0.996

atrx

0.995

blm

0.995

atm

0.995

bard1

0.993

exo1

0.990

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
atm	atrx	ENSPREP00000024388	ENSPREP00000006575	Non-specific serine/threonine protein kinase.	ATRX chromatin remodeler.	0.660
atm	bard1	ENSPREP00000024388	ENSPREP00000017694	Non-specific serine/threonine protein kinase.	BRCA1 associated RING domain 1.	0.964
atm	blm	ENSPREP00000024388	ENSPREP00000011311	Non-specific serine/threonine protein kinase.	BLM RecQ like helicase.	0.988
atm	brca1	ENSPREP00000024388	ENSPREP00000033076	Non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.999
atm	brca2	ENSPREP00000024388	ENSPREP00000018297	Non-specific serine/threonine protein kinase.	BRCA2 DNA repair associated.	0.984
atm	exo1	ENSPREP00000024388	ENSPREP00000027206	Non-specific serine/threonine protein kinase.	Exonuclease 1.	0.978
atm	rad50	ENSPREP00000024388	ENSPREP00000008829	Non-specific serine/threonine protein kinase.	RAD50 homolog, double strand break repair protein.	0.999
atm	rad51	ENSPREP00000024388	ENSPREP00000001621	Non-specific serine/threonine protein kinase.	RAD51 recombinase.	0.995
atm	rad52	ENSPREP00000024388	ENSPREP00000023884	Non-specific serine/threonine protein kinase.	RAD52 homolog, DNA repair protein.	0.984
atm	xrcc3	ENSPREP00000024388	ENSPREP00000017856	Non-specific serine/threonine protein kinase.	DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily.	0.925
atrx	atm	ENSPREP00000006575	ENSPREP00000024388	ATRX chromatin remodeler.	Non-specific serine/threonine protein kinase.	0.660
atrx	bard1	ENSPREP00000006575	ENSPREP00000017694	ATRX chromatin remodeler.	BRCA1 associated RING domain 1.	0.533
atrx	blm	ENSPREP00000006575	ENSPREP00000011311	ATRX chromatin remodeler.	BLM RecQ like helicase.	0.620
atrx	brca1	ENSPREP00000006575	ENSPREP00000033076	ATRX chromatin remodeler.	Uncharacterized protein.	0.612
atrx	brca2	ENSPREP00000006575	ENSPREP00000018297	ATRX chromatin remodeler.	BRCA2 DNA repair associated.	0.671
atrx	exo1	ENSPREP00000006575	ENSPREP00000027206	ATRX chromatin remodeler.	Exonuclease 1.	0.584
atrx	rad50	ENSPREP00000006575	ENSPREP00000008829	ATRX chromatin remodeler.	RAD50 homolog, double strand break repair protein.	0.931
atrx	rad51	ENSPREP00000006575	ENSPREP00000001621	ATRX chromatin remodeler.	RAD51 recombinase.	0.995
atrx	rad52	ENSPREP00000006575	ENSPREP00000023884	ATRX chromatin remodeler.	RAD52 homolog, DNA repair protein.	0.920
atrx	xrcc3	ENSPREP00000006575	ENSPREP00000017856	ATRX chromatin remodeler.	DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily.	0.657