STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clasrpCLK4-associating serine/arginine rich protein. (607 aa)    
Predicted Functional Partners:
cfap20
Cilia and flagella associated protein 20.
   
 
 0.962
snip1
Smad nuclear interacting protein.
   
 
 0.746
luc7l3
Uncharacterized protein.
   
 
 0.704
ENSPREP00000027150
Uncharacterized protein.
   
 
 0.698
gphn
Gephyrin b.
 
      0.692
clg5h3orf67
Zgc:162324.
   
 
 0.641
cmtr2
Cap methyltransferase 2.
      
 0.609
gpr18
G protein-coupled receptor 18.
      
 0.600
LOC103468180
Zgc:158803.
   
 
 0.596
Luc7l
LUC7-like (S. cerevisiae).
   
 
 0.596
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.