STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cdh23Uncharacterized protein. (1041 aa)    
Predicted Functional Partners:
ush1c
Usher syndrome 1C.
   
 
 0.918
pcdh15
Protocadherin-related 15a.
   
0.844
LOC103481331
Uncharacterized protein.
   
0.844
LOC103465658
Uncharacterized protein.
   
0.831
LOC103463938
Catenin (cadherin-associated protein), delta 1.
   
 0.597
CTNND1
Catenin delta 1.
   
 0.597
ENSPREP00000021838
Uncharacterized protein.
 
 
 0.595
LOC103475259
Clarin 1.
   
  
 0.556
TMC1
Transmembrane channel-like protein.
   
 0.552
adgrv1
Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.
      
 0.549
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.