STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103475277ATP-binding cassette, sub-family G (WHITE), member 1. (620 aa)    
Predicted Functional Partners:
abcg5
ATP-binding cassette, sub-family G (WHITE), member 5.
   
0.838
LOC103474828
Apolipoprotein A-Ib.
   
 0.573
abcc12
ATP-binding cassette, sub-family C (CFTR/MRP), member 12.
   
0.572
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
   
 0.560
LOC103477850
Uncharacterized protein.
   
 0.524
LOC103477849
Uncharacterized protein.
   
 0.524
cdca8
Cell division cycle associated 8.
   
 
 0.478
atp5f1c
ATP synthase subunit gamma.
   
   0.475
LOC103464796
ATP-binding cassette, sub-family C (CFTR/MRP), member 6a.
   
 0.472
abcc8
ATP-binding cassette, sub-family C (CFTR/MRP), member 8.
   
 0.469
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.