STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yme1l1YME1-like 1a; Belongs to the AAA ATPase family. (687 aa)    
Predicted Functional Partners:
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
   0.874
timmdc1
Translocase of inner mitochondrial membrane domain containing 1.
   
   0.873
stoml2
Stomatin (EPB72)-like 2.
   
 0.768
clpx
Caseinolytic mitochondrial matrix peptidase chaperone subunit b.
  
  
 0.756
phb
Prohibitin.
   
 0.750
ENSPREP00000006614
Prohibitin.
   
 0.701
phb2
Prohibitin.
   
 0.701
mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.676
oma1
OMA1 zinc metallopeptidase.
  
 
 0.659
mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.652
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.