STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ube2j1Ubiquitin-conjugating enzyme E2, J1. (275 aa)    
Predicted Functional Partners:
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
   
 
 0.986
ENSPREP00000020277
RBR-type E3 ubiquitin transferase.
    
 0.948
aup1
AUP1 lipid droplet regulating VLDL assembly factor.
   
 
 0.885
amfr
Autocrine motility factor receptor b.
    
 
 0.882
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.882
ube2w
UBIQUITIN_CONJUGAT_2 domain-containing protein.
     
 0.841
ube2g2
Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast).
    
 0.826
LOC103464541
Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.
   
 0.793
uba6
Ubiquitin like modifier activating enzyme 6.
   
 0.793
LOC103467931
Ubiquitin-like modifier activating enzyme 1; Belongs to the ubiquitin-activating E1 family.
   
 0.793
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.