CTCF protein (Poecilia reticulata) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

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[Homology]

Score

CTCF

CCCTC-binding factor. (760 aa)

Predicted Functional Partners:

smc3

0.802

parp1

0.801

LOC103468858

0.741

LOC103469057

0.741

LOC103472890

0.663

LOC103467726

0.663

LOC103478347

0.663

Rpl31

0.661

mecp2

0.653

LOC103475870

0.644

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTCF	LOC103467726	ENSPREP00000001671	ENSPREP00000003268	CCCTC-binding factor.	RAD21 cohesin complex component like 1.	0.663
CTCF	LOC103468858	ENSPREP00000001671	ENSPREP00000018755	CCCTC-binding factor.	SUZ12 polycomb repressive complex 2 subunit b.	0.741
CTCF	LOC103469057	ENSPREP00000001671	ENSPREP00000019458	CCCTC-binding factor.	VEFS-Box domain-containing protein.	0.741
CTCF	LOC103472890	ENSPREP00000001671	ENSPREP00000002991	CCCTC-binding factor.	RAD21 cohesin complex component b.	0.663
CTCF	LOC103475870	ENSPREP00000001671	ENSPREP00000002220	CCCTC-binding factor.	Nucleophosmin 1a.	0.644
CTCF	LOC103478347	ENSPREP00000001671	ENSPREP00000018269	CCCTC-binding factor.	RAD21 cohesin complex component a.	0.663
CTCF	Rpl31	ENSPREP00000001671	ENSPREP00000015832	CCCTC-binding factor.	Ribosomal protein L31.	0.661
CTCF	mecp2	ENSPREP00000001671	ENSPREP00000018569	CCCTC-binding factor.	Methyl CpG binding protein 2.	0.653
CTCF	parp1	ENSPREP00000001671	ENSPREP00000001596	CCCTC-binding factor.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.801
CTCF	smc3	ENSPREP00000001671	ENSPREP00000000387	CCCTC-binding factor.	Structural maintenance of chromosomes protein.	0.802
LOC103467726	CTCF	ENSPREP00000003268	ENSPREP00000001671	RAD21 cohesin complex component like 1.	CCCTC-binding factor.	0.663
LOC103467726	LOC103472890	ENSPREP00000003268	ENSPREP00000002991	RAD21 cohesin complex component like 1.	RAD21 cohesin complex component b.	0.904
LOC103467726	LOC103478347	ENSPREP00000003268	ENSPREP00000018269	RAD21 cohesin complex component like 1.	RAD21 cohesin complex component a.	0.904
LOC103467726	parp1	ENSPREP00000003268	ENSPREP00000001596	RAD21 cohesin complex component like 1.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.841
LOC103467726	smc3	ENSPREP00000003268	ENSPREP00000000387	RAD21 cohesin complex component like 1.	Structural maintenance of chromosomes protein.	0.994
LOC103468858	CTCF	ENSPREP00000018755	ENSPREP00000001671	SUZ12 polycomb repressive complex 2 subunit b.	CCCTC-binding factor.	0.741
LOC103468858	LOC103469057	ENSPREP00000018755	ENSPREP00000019458	SUZ12 polycomb repressive complex 2 subunit b.	VEFS-Box domain-containing protein.	0.901
LOC103469057	CTCF	ENSPREP00000019458	ENSPREP00000001671	VEFS-Box domain-containing protein.	CCCTC-binding factor.	0.741
LOC103469057	LOC103468858	ENSPREP00000019458	ENSPREP00000018755	VEFS-Box domain-containing protein.	SUZ12 polycomb repressive complex 2 subunit b.	0.901
LOC103472890	CTCF	ENSPREP00000002991	ENSPREP00000001671	RAD21 cohesin complex component b.	CCCTC-binding factor.	0.663