Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC103464032Reticulon 4 receptor-like 2 a. (504 aa)    
Predicted Functional Partners:
LOC103469122
Si:ch211-120g10.1.
     
 0.608
timm10
Translocase of inner mitochondrial membrane 10 homolog (yeast).
   
  
 0.597
arhgef9
Cdc42 guanine nucleotide exchange factor (GEF) 9b.
    
 
 0.589
LOC103473119
3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.
      
 0.580
ufm1
Ubiquitin-fold modifier 1.
      
 0.491
HABP4
Hyaluronan binding protein 4.
      
 0.476
utp18
WD_REPEATS_REGION domain-containing protein.
      
 0.459
npas4
Neuronal PAS domain protein 4a.
      
 0.434
LOC103464793
Uncharacterized protein.
      
 0.432
LOC103480119
RNA binding motif protein 4.1.
      
 0.405
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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