STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103467753CCAAT enhancer binding protein beta. (285 aa)    
Predicted Functional Partners:
LOC103477731
Activating transcription factor 4a.
   
 0.971
LOC103468496
Activating transcription factor 4b.
   
 0.922
myb
V-myb avian myeloblastosis viral oncogene homolog.
    
 0.901
ddit3
DNA-damage-inducible transcript 3.
    
 0.816
Cebpd
CCAAT/enhancer-binding protein.
   
0.802
atf3
Activating transcription factor 3.
   
 0.774
LOC103468460
E1A binding protein p300 b.
    
 0.720
LOC103482005
E1A binding protein p300 a.
    
 0.720
prdm16
Si:ch211-263k4.2.
    
 0.710
LOC103457598
Si:ch211-153j24.3.
   
 0.688
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.