STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466235HECT domain-containing protein. (976 aa)    
Predicted Functional Partners:
herc3
HECT and RLD domain containing E3 ubiquitin protein ligase 3.
  
 
0.919
LOC103466236
HECT domain-containing protein.
  
 
0.916
LOC103461037
RAN binding protein 2.
   
 0.685
rbm18
RNA binding motif protein 18.
      
 0.589
dctn3
Dynactin 3 (p22).
    
 
 0.539
supt7l
SPT7 like, STAGA complex gamma subunit.
      
 0.534
Ost4
Uncharacterized protein.
      
 0.503
cmtr1
Cap methyltransferase 1.
   
 
 0.502
LOC103478666
Ring finger protein 41, like.
    
 
 0.489
rangap1
RAN GTPase activating protein 1a.
   
 0.465
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.