STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103468029MSP domain-containing protein. (260 aa)    
Predicted Functional Partners:
bcap31
B cell receptor associated protein 31.
   
 0.807
bcap29
Uncharacterized protein.
   
 0.807
stard3
StAR-related lipid transfer (START) domain containing 3.
    
 
 0.805
osbpl9
Oxysterol-binding protein; Belongs to the OSBP family.
   
 
 0.803
sec63
SEC63 homolog, protein translocation regulator.
    
 
 0.779
LOC103477100
Regulator of microtubule dynamics 2.
    
 0.688
ttc1
Tetratricopeptide repeat domain 1.
    
 
 0.687
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.684
ddost
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...]
   
 0.681
zfyve27
Zinc finger, FYVE domain containing 27.
    
 
 0.661
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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