STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466236HECT domain-containing protein. (1004 aa)    
Predicted Functional Partners:
LOC103466235
HECT domain-containing protein.
  
 
0.916
herc3
HECT and RLD domain containing E3 ubiquitin protein ligase 3.
  
  
 
0.907
LOC103473220
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.742
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.663
rps27a
Ribosomal protein S27a.
    
 0.628
rsad2
Radical S-adenosyl methionine domain containing 2.
   
 
 0.613
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.573
LOC103481249
Interferon regulatory factor 3.
   
 0.537
becn1
Beclin 1, autophagy related.
    
  0.519
ubb
Uncharacterized protein.
   
 0.512
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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