STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vcam1Vascular cell adhesion molecule 1b. (929 aa)    
Predicted Functional Partners:
itga4
Integrin alpha 4; Belongs to the integrin alpha chain family.
   
 0.960
itga9
Integrin, alpha 9; Belongs to the integrin alpha chain family.
   
 0.953
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.931
sele
Selectin E.
   
 
 0.773
LOC103470686
Interleukin-1.
      
 0.678
il10
Interleukin 10.
     
 0.656
LOC103466132
CD44 molecule (Indian blood group) b.
  
  
 0.635
ENSPREP00000024840
TIR domain-containing protein.
   
 0.627
cadm1
Cell adhesion molecule 1a.
    
 0.617
relb
V-rel avian reticuloendotheliosis viral oncogene homolog B.
     
 0.612
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.