STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vcam1Vascular cell adhesion molecule 1b. (929 aa)    
Predicted Functional Partners:
itga9
Integrin, alpha 9; Belongs to the integrin alpha chain family.
   
 0.949
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 
 0.933
LOC103479472
Integrin beta; Belongs to the integrin beta chain family.
   
 
 0.933
sele
Selectin E.
   
 
 0.710
relb
V-rel avian reticuloendotheliosis viral oncogene homolog B.
    
 0.632
LOC103480049
Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex.
      
 0.597
LOC103470686
Interleukin-1.
    
 
 0.580
LOC103466132
CD44 molecule (Indian blood group) b.
  
   
 0.570
LOC103465403
O-GlcNAcase like.
      
 0.542
LOC103469320
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
      
 0.528
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.