STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smoc2SPARC related modular calcium binding 2. (450 aa)    
Predicted Functional Partners:
SIPA1L2
Signal induced proliferation associated 1 like 2.
      
 0.670
wdr27
Uncharacterized protein.
      
 0.670
slc26a5
Solute carrier family 26 member 5.
      
 0.591
msantd1
Myb/SANT-like DNA-binding domain containing 1.
      
 0.581
tdrp
Si:ch211-225h24.2.
      
 0.577
mipol1
Uncharacterized protein.
      
 0.572
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
      
 0.549
ush2a
Usher syndrome 2A (autosomal recessive, mild).
   
  
 0.535
ush1c
Usher syndrome 1C.
      
 0.528
fbxo38
F-box protein 38.
      
 0.526
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.