STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDHR1Cadherin related family member 1. (879 aa)    
Predicted Functional Partners:
LOC103465321
Junction plakoglobin a.
    
 0.606
LOC103472282
Uncharacterized protein.
    
 0.606
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.606
ttc8
Tetratricopeptide repeat domain 8.
    
 
 0.589
lgmn
Legumain.
      
 0.578
tectb
Tectorin beta.
      
 0.573
dthd1
Death domain containing 1.
      
 0.527
ush1c
Usher syndrome 1C.
   
 
 0.527
ctnnd2
Catenin (cadherin-associated protein), delta 2b.
    
 0.512
LOC103463938
Catenin (cadherin-associated protein), delta 1.
    
 0.512
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.