STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ankrd6Ankyrin repeat domain 6. (768 aa)    
Predicted Functional Partners:
LOC103467536
Prickle homolog 2a.
    
 0.918
prickle2
Prickle homolog 2b.
    
 0.882
LOC103459444
Prickle homolog 1b.
    
 0.857
PRICKLE1
Prickle homolog 1a.
    
 0.847
ENSPREP00000004657
Amyloid beta (A4) precursor protein-binding, family B, member 3.
    
 0.843
smc2
Structural maintenance of chromosomes protein.
    
   0.786
LOC103467721
Prickle homolog 3.
    
 0.690
VANGL1
Vang-like protein.
    
 0.687
app
Amyloid beta (A4) precursor protein a.
    
 0.683
LOC103459816
Amyloid beta (A4) precursor protein b.
    
 0.683
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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