STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEMA4FSsemaphorin 4F; Belongs to the semaphorin family. (841 aa)    
Predicted Functional Partners:
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.654
KCNIP4
Potassium voltage-gated channel interacting protein 4.
      
 0.535
LOC103466876
Plexin b1a.
    
 0.505
ENSPREP00000019059
Sema domain-containing protein.
    
 0.505
plxnb2
Plexin b2b.
    
 0.505
LOC103465508
Plexin b1b.
    
 0.505
PLXNB2
Plexin B2.
    
 0.505
dqx1
DEAQ box RNA-dependent ATPase 1.
      
 0.503
met
MET proto-oncogene, receptor tyrosine kinase.
   
 0.496
LOC103464537
Macrophage stimulating 1 receptor a.
   
 0.496
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.