STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ttf2Uncharacterized protein. (1028 aa)    
Predicted Functional Partners:
rec114
REC114 meiotic recombination protein.
  
 
 0.901
pnkp
Polynucleotide kinase 3'-phosphatase.
  
 
 0.901
psph
Phosphoserine phosphatase.
  
  
 0.781
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
  
  
 0.753
pigl
Phosphatidylinositol glycan anchor biosynthesis, class L.
    
  0.751
fh
Fumarate hydratase.
   
 
 0.741
rad50
RAD50 homolog, double strand break repair protein.
    
 0.733
cs
Citrate synthase; Belongs to the citrate synthase family.
    
 0.700
impa1
Inositol-1-monophosphatase.
  
 
 0.696
LOC103456804
Inositol-1-monophosphatase.
  
 
 0.696
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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