STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ogfod12-oxoglutarate and iron-dependent oxygenase domain containing 1. (459 aa)    
Predicted Functional Partners:
rps23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
 0.985
sycp3
Synaptonemal complex protein 3.
   
 
 0.958
jmjd4
Jumonji domain containing 4.
      
 0.728
ENSPREP00000024840
TIR domain-containing protein.
      
 0.722
gcn1
GCN1 activator of EIF2AK4.
   
 
 0.689
mrps12
Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
   
 0.674
atxn2
Ataxin 2.
      
 0.670
tma16
Translation machinery associated 16 homolog.
   
  
 0.637
Abcf3
ATP-binding cassette, sub-family F (GCN20), member 3.
   
   0.627
ABCF3
ATP binding cassette subfamily F member 3.
   
   0.627
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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