STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spg11SPG11 vesicle trafficking associated, spatacsin. (2269 aa)    
Predicted Functional Partners:
zfyve26
Zinc finger, FYVE domain containing 26.
   
 
 0.775
ap5z1
Adaptor related protein complex 5 subunit zeta 1.
    
 
 0.692
tecpr2
Tectonin beta-propeller repeat containing 2.
   
  
 0.686
Zfyve21
Uncharacterized protein.
   
 
 0.686
gak
Cyclin G associated kinase.
      
 0.681
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
      
 0.681
spg21
SPG21 abhydrolase domain containing, maspardin.
      
 0.650
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
      
 0.590
ap5m1
Adaptor related protein complex 5 subunit mu 1; Belongs to the adaptor complexes medium subunit family.
    
 
 0.586
ap5s1
Adaptor related protein complex 5 subunit sigma 1.
    
 
 0.566
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.