STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000001825RING-CH-type domain-containing protein. (923 aa)    
Predicted Functional Partners:
ropn1l
Rhophilin associated tail protein 1-like.
 
    
 0.715
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
      
 0.708
cmbl
Carboxymethylenebutenolidase homolog (Pseudomonas).
      
 0.693
stard7
StAR-related lipid transfer (START) domain containing 7.
   
  
 0.689
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 
 0.668
LOC103466190
CCR4-NOT transcription complex, subunit 2.
    
 
 0.668
ube2g2
Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast).
    
 
 0.667
ctnnd2
Catenin (cadherin-associated protein), delta 2b.
      
 0.625
ube2j2
Ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast).
    
 
 0.615
amfr
Autocrine motility factor receptor b.
    
 
 0.610
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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